PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022884-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 702aa    MW: 78485.8 Da    PI: 5.6592
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022884-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.4e-14467513455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  WALNUT_00022884-RA 467 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYLKQLR 513
                         7999**********************8.....8*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-519186IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.676463512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-18465530IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-19467528IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.95E-15467517No hitNo description
PfamPF000108.8E-12467512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-17469518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MAAPPSSQLQ SMLQAAVQSV QWTYSLFWQF CPQQGILVWA DGYYNGAIKT RKTVQPMEVS  60
TEEASLQRSQ QLRELYDSLS AAETNQPARR PCAALSPEDL TESEWFYLMC VSFSFSPGVG  120
LPGKAYAKRQ HVWLTGANDV DSKTFSRAIL AKTVLCIPLL DGVVEFGTTE KVQEDLGLIE  180
QVKSFFTGHP HQPHPPKPAL SEHSTSNPET SSDHPRFHSP PVPVLYPVAD VPVNTNNPEE  240
DEEEEEEEEE DVESDSEIET GRNNPHITPA TNPQGIAAAA EPSELMQLEM SEDIRLGSPD  300
DGSNNLDSDF HMLGVGQSGN PTNQQRQTDS YRAESTRRWP LSQQDPLLGS GIQQPPSDLA  360
QEDTHYSQTV STIVQSQTSR RAKSASTDYI SYSSQSAFTK WTTTTVDHHL RLPIDQSTSQ  420
WLLKYVLLSI PFLHTKYRDE NSPKLRDSDA TTTRFKKGTP QDELSANHVL AERRRREKLN  480
ERFIILRSLV PFVTKMDKAS ILGDTIEYLK QLRKKIHDLE AHNRQMEVDQ RSRSLGDLQR  540
STSLGDLQRS SSSLKEQRSG VTVVDRARVG MDNRVQVVQP GPEKRKLRIV EGSNGSAKAK  600
TVDSSPPPPP SPTSMETTVQ VSIIESEGLL ELQCPYKEGL LLDIMQMLRE LRIETTTVQS  660
SLTNGFFVAE LRAKVKENVS GKKRSIVEVK RAINKIIPHN DS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A4e-2091869192Transcription factor MYC3
4rs9_A4e-2091869192Transcription factor MYC3
4rqw_B4e-2091869192Transcription factor MYC3
4rqw_A4e-2091869192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1471476ERRRRE
2472477RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007050639.10.0BHLH-like DNA binding protein
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0F7G6P00.0A0A0F7G6P0_9R
STRINGVIT_07s0104g00090.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-97bHLH family protein